Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
mma_3518ABC-type transport system, ATPase component; Belongs to the ABC transporter superfamily. (333 aa)    
Predicted Functional Partners:
dppC2
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.996
oppC
ABC-type oligopeptide transport systems, permease component.
 
 0.986
dppB2
Transmembrane (dipeptide transport system permease) ABC transporter protein.
 
 
 0.978
mma_0259
ABC-type transport systems, permease component.
 
 0.957
dppA2
ABC-type transport system, periplasmic component.
 
 
 0.939
mma_0265
ABC-type transport systems, permease component.
 
 
 0.908
oppB
ABC-type oligopeptide transport systems, permease component.
 
 
 0.908
mma_0264
ABC-type transport system, periplasmic component.
 
 
 0.817
dppD2
Oligopeptide ATP-binding ABC transporter protein; Belongs to the ABC transporter superfamily.
 
    
0.817
oppA
ABC-type transport system, periplasmic component.
 
 
 0.710
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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