Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_3539Uncharacterized conserved protein. (87 aa)    
Predicted Functional Partners:
mma_3541
Thiosulfate reductase cytochrome B subunit (membrane anchoring protein).
 
     0.903
mma_3540
Molybdopterin binding oxidoreductase.
 
     0.885
mma_3543
Uncharacterized conserved protein.
 
     0.472
rpoE9
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.470
mma_2325
Uncharacterized conserved protein.
  
     0.410
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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