Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_3559Uncharacterized conserved protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. (198 aa)    
Predicted Functional Partners:
mma_2049
Outer membrane chaperone Skp; Belongs to the skp family.
    
 
 0.706
mma_2147
Uncharacterized conserved protein.
  
    0.643
mma_1739
Uncharacterized conserved protein.
  
     0.577
mma_3558
Hypothetical protein.
       0.539
mma_0865
Hypothetical protein.
 
   
 0.533
mma_3557
Hypothetical protein.
       0.519
mma_3690
Uncharacterized conserved protein.
  
    0.507
mma_3560
Uncharacterized conserved protein.
       0.420
mma_0824
Conserved domain containing protein.
  
     0.417
mma_0011
Hypothetical protein.
  
     0.409
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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