Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
mma_3565ABC-type transport system, periplasmic component/surface lipoprotein. (329 aa)    
Predicted Functional Partners:
mma_3564
ABC-type uncharacterized transport systems, ATPase component.
 
 
 0.995
mma_3562
ABC-type transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.992
mma_3563
ABC-type uncharacterized transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.991
mma_1677
ABC-type transport systems, ATPase component.
 
 
 0.981
mma_1679
ABC-type transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.969
mma_1678
Transmembrane ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.967
mma_1672
ABC-type transport system, periplasmic component/surface lipoprotein.
  
 
 
0.930
mma_3561
Isochorismatase hydrolase.
 
     0.646
mma_3560
Uncharacterized conserved protein.
       0.467
mma_3566
Porin.
       0.416
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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