Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_3566Porin. (363 aa)    
Predicted Functional Partners:
mma_1108
Uncharacterized conserved protein; Putative lipoprotein.
  
     0.726
mma_1502
Uncharacterized conserved protein.
  
     0.691
mma_0320
Uncharacterized conserved protein; Probable transmembrane protein.
  
     0.643
mma_1457
Uncharacterized conserved protein.
  
     0.638
mma_2571
Uncharacterized conserved protein.
  
     0.623
mma_0159
Uncharacterized conserved protein.
  
     0.618
mma_0729
Uncharacterized conserved protein.
  
     0.609
mma_0619
Uncharacterized conserved protein.
  
     0.584
mma_1519
Uncharacterized conserved protein.
  
     0.578
mma_3434
Uncharacterized conserved protein.
  
     0.555
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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