Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RD1_0213 | RD1_0634 | RD1_0213 | RD1_0634 | Thioredoxin, putative. | Antioxidant, AhpC/Tsa family, putative. | 0.845 |
RD1_0213 | RD1_0946 | RD1_0213 | RD1_0946 | Thioredoxin, putative. | Antioxidant, AhpC/Tsa family, putative; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. | 0.624 |
RD1_0213 | ccdA | RD1_0213 | RD1_0214 | Thioredoxin, putative. | Cytochrome c biogenesis protein, putative. | 0.911 |
RD1_0213 | fdhB-2 | RD1_0213 | RD1_4233 | Thioredoxin, putative. | Formate dehydrogenase, beta subunit. | 0.805 |
RD1_0213 | msrA | RD1_0213 | RD1_0596 | Thioredoxin, putative. | Peptide methionine sulfoxide reductase, putative; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.716 |
RD1_0213 | msrA-1 | RD1_0213 | RD1_0419 | Thioredoxin, putative. | methionine-S-sulfoxide reductase, putative; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.716 |
RD1_0213 | rpoB | RD1_0213 | RD1_4019 | Thioredoxin, putative. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.610 |
RD1_0213 | senC | RD1_0213 | RD1_0460 | Thioredoxin, putative. | SenC protein; Sensor histidine kinase RegB. | 0.707 |
RD1_0213 | tmd | RD1_0213 | RD1_4141 | Thioredoxin, putative. | Trimethylamine dehydrogenase. | 0.594 |
RD1_0213 | tmd-2 | RD1_0213 | RD1_4142 | Thioredoxin, putative. | Trimethylamine dehydrogenase. | 0.594 |
RD1_0634 | RD1_0213 | RD1_0634 | RD1_0213 | Antioxidant, AhpC/Tsa family, putative. | Thioredoxin, putative. | 0.845 |
RD1_0634 | RD1_0946 | RD1_0634 | RD1_0946 | Antioxidant, AhpC/Tsa family, putative. | Antioxidant, AhpC/Tsa family, putative; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. | 0.848 |
RD1_0634 | tmd | RD1_0634 | RD1_4141 | Antioxidant, AhpC/Tsa family, putative. | Trimethylamine dehydrogenase. | 0.427 |
RD1_0634 | tmd-2 | RD1_0634 | RD1_4142 | Antioxidant, AhpC/Tsa family, putative. | Trimethylamine dehydrogenase. | 0.427 |
RD1_0946 | RD1_0213 | RD1_0946 | RD1_0213 | Antioxidant, AhpC/Tsa family, putative; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. | Thioredoxin, putative. | 0.624 |
RD1_0946 | RD1_0634 | RD1_0946 | RD1_0634 | Antioxidant, AhpC/Tsa family, putative; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. | Antioxidant, AhpC/Tsa family, putative. | 0.848 |
ccdA | RD1_0213 | RD1_0214 | RD1_0213 | Cytochrome c biogenesis protein, putative. | Thioredoxin, putative. | 0.911 |
fdhB-2 | RD1_0213 | RD1_4233 | RD1_0213 | Formate dehydrogenase, beta subunit. | Thioredoxin, putative. | 0.805 |
fdhB-2 | senC | RD1_4233 | RD1_0460 | Formate dehydrogenase, beta subunit. | SenC protein; Sensor histidine kinase RegB. | 0.429 |
fdhB-2 | tmd | RD1_4233 | RD1_4141 | Formate dehydrogenase, beta subunit. | Trimethylamine dehydrogenase. | 0.453 |
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