STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_0413Response regulator. (403 aa)    
Predicted Functional Partners:
rsbW
Serine-protein kinase, putative.
 
 
 0.996
RD1_0414
Hpt domain protein.
 
 
 0.996
RD1_2531
Conserved hypothetical protein.
 
  
 0.993
RD1_0026
Anti-anti-sigma factor, putative; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.991
RD1_3577
Sensory box histidine kinase/response regulator, putative.
 
 
0.982
cheL
Chemotactic signal-response protein, putative.
   
    0.969
RD1_3595
Two-component hybrid sensor and regulator, putative.
 
 
 0.965
RD1_1456
EAL domain protein.
  
 
 0.941
fliG
Flagellar motor switch protein FliG, putative.
 
  
 0.930
RD1_1968
Sensory box protein, putative.
  
 
 0.924
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.