Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RD1_0500 | RD1_0501 | RD1_0500 | RD1_0501 | Hypothetical protein. | Putative cyclase. | 0.840 |
RD1_0500 | RD1_1969 | RD1_0500 | RD1_1969 | Hypothetical protein. | Sensory box protein, putative. | 0.429 |
RD1_0501 | RD1_0500 | RD1_0501 | RD1_0500 | Putative cyclase. | Hypothetical protein. | 0.840 |
RD1_0501 | RD1_1969 | RD1_0501 | RD1_1969 | Putative cyclase. | Sensory box protein, putative. | 0.862 |
RD1_0501 | RD1_3133 | RD1_0501 | RD1_3133 | Putative cyclase. | mazG family protein. | 0.900 |
RD1_0501 | cpdA | RD1_0501 | RD1_3568 | Putative cyclase. | Ser/Thr protein phosphatase family protein, putative; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes. | 0.939 |
RD1_0501 | cyaA | RD1_0501 | RD1_2687 | Putative cyclase. | Adenylate cyclase 1, putative. | 0.965 |
RD1_0501 | moaA-2 | RD1_0501 | RD1_3307 | Putative cyclase. | Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. | 0.816 |
RD1_0501 | ndk | RD1_0501 | RD1_3111 | Putative cyclase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.921 |
RD1_0501 | pyk | RD1_0501 | RD1_1007 | Putative cyclase. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.909 |
RD1_0501 | ribB | RD1_0501 | RD1_1801 | Putative cyclase. | 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.814 |
RD1_0501 | spoT | RD1_0501 | RD1_1359 | Putative cyclase. | Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.901 |
RD1_1969 | RD1_0500 | RD1_1969 | RD1_0500 | Sensory box protein, putative. | Hypothetical protein. | 0.429 |
RD1_1969 | RD1_0501 | RD1_1969 | RD1_0501 | Sensory box protein, putative. | Putative cyclase. | 0.862 |
RD1_1969 | cpdA | RD1_1969 | RD1_3568 | Sensory box protein, putative. | Ser/Thr protein phosphatase family protein, putative; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes. | 0.455 |
RD1_1969 | cyaA | RD1_1969 | RD1_2687 | Sensory box protein, putative. | Adenylate cyclase 1, putative. | 0.762 |
RD1_1969 | ribB | RD1_1969 | RD1_1801 | Sensory box protein, putative. | 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.510 |
RD1_3133 | RD1_0501 | RD1_3133 | RD1_0501 | mazG family protein. | Putative cyclase. | 0.900 |
RD1_3133 | cpdA | RD1_3133 | RD1_3568 | mazG family protein. | Ser/Thr protein phosphatase family protein, putative; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes. | 0.900 |
RD1_3133 | cyaA | RD1_3133 | RD1_2687 | mazG family protein. | Adenylate cyclase 1, putative. | 0.900 |
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