STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_0894Conserved hypothetical protein. (270 aa)    
Predicted Functional Partners:
soxZ
Sulfur oxidation Z protein.
   
 0.977
RD1_0896
Conserved hypothetical protein.
 
     0.950
RD1_0897
Conserved hypothetical protein.
 
     0.943
RD1_0895
Hypothetical protein.
 
     0.941
soxD-2
Diheme cytochrome c SoxD.
    
 0.937
soxB-2
Sulfur oxidation B protein; Belongs to the 5'-nucleotidase family.
   
 0.928
RD1_0884
Conserved hypothetical protein.
  
  
 
0.920
soxA-2
Diheme cytochrome c SoxA.
    
 0.910
soxC
Sulfite dehydrogenase SoxC protein.
    
 0.910
mst
3-mercaptopyruvate sulfurtransferase.
     
 0.907
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.