STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_0936Putative ammonium ABC transporter, permease component. (448 aa)    
Predicted Functional Partners:
glnB
Nitrogen regulatory protein P-II, putative; Belongs to the P(II) protein family.
 
 0.998
glnB-2
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 
 0.996
RD1_3393
EAL domain protein.
     0.922
gltB
Glutamate synthase, large subunit.
 
  
 0.907
RD1_1456
EAL domain protein.
      0.873
RD1_4210
EAL/GGDEF/PAS domain protein.
 
    
 0.844
RD1_0310
Hypothetical protein.
  
 
 0.823
RD1_3207
GGDEF/EAL domain protein.
 
    
 0.821
RD1_2218
Sensory box/GGDEF family protein, putative.
 
    
 0.787
RD1_1709
GGDEF/EAL domain protein.
 
    
 0.785
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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