STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_1025ABC transporter, ATP-binding protein, putative. (259 aa)    
Predicted Functional Partners:
RD1_2241
Permease, putative.
  
 
 0.978
RD1_1026
ABC transporter, permease protein, putative.
 
 0.976
RD1_1024
Conserved hypothetical protein.
  
 0.956
RD1_1027
Conserved hypothetical protein.
 
  
 0.951
RD1_1021
Conserved hypothetical protein.
 
    0.852
RD1_1019
Hypothetical protein.
 
    0.838
RD1_1020
Conserved hypothetical protein.
 
     0.814
RD1_1018
Periplasmic serine proteinase, putative.
 
  
 0.782
RD1_1023
Hypothetical protein.
       0.767
RD1_1861
ABC transporter, ATP-binding protein, putative.
  
     0.715
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.