STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_1099Oligopeptide ABC transporter, permease protein. (384 aa)    
Predicted Functional Partners:
RD1_1102
ABC transporter ATP-binding protein, putative; Belongs to the ABC transporter superfamily.
  
 0.992
RD1_2222
Peptide ABC transporter, ATP-binding protein, putative; Belongs to the ABC transporter superfamily.
  
 0.986
RD1_2221
Oligopeptide ABC transporter, ATP-binding subunit; Belongs to the ABC transporter superfamily.
  
 0.983
RD1_1100
Oligopeptide ABC transporter, permease protein, putative.
  
 0.968
RD1_1101
Oligopeptide ABC transporter, periplasmic binding protein, putative.
 
 
 0.963
RD1_1266
Peptide ABC transporter, ATP-binding protein, putative; Belongs to the ABC transporter superfamily.
  
 0.958
RD1_1861
ABC transporter, ATP-binding protein, putative.
  
 0.911
phnK
Phosphonate C-P lyase system protein PhnK.
 
     0.908
RD1_1976
ABC transporter, ATP-binding protein, putative; Belongs to the ABC transporter superfamily.
  
 0.898
RD1_1862
Oligopeptide ABC transporter, permease protein.
  
 0.862
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.