STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_1390Conserved hypothetical protein. (84 aa)    
Predicted Functional Partners:
RD1_1389
cob(I)alamin adenosyltransferase, putative; Belongs to the Cob(I)alamin adenosyltransferase family.
  
    0.861
RD1_1391
Oxidoreductase, putative.
       0.806
RD1_1946
Hypothetical protein.
  
     0.688
RD1_1966
Conserved hypothetical protein.
  
     0.639
etfA
Electron transfer flavoprotein, alpha subunit.
       0.619
etfB
Electron transfer flavoprotein, beta subunit.
       0.619
RD1_2624
Conserved hypothetical protein.
  
     0.570
RD1_1392
Hypothetical protein.
       0.567
RD1_2747
Conserved hypothetical protein.
  
     0.562
ftsQ
Cell division protein FtsQ, putative; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.550
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.