STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_1721Type I secretion membrane fusion protein, HlyD family, putative. (437 aa)    
Predicted Functional Partners:
prsD
Type I secretion system ATPase.
  
 0.971
RD1_0594
ABC transporter, ATP-binding permease protein, putative.
 
 0.849
RD1_3725
Toxin secretion ABC transporter, ATP binding protein, putative.
 
 0.843
RD1_0593
Putative cyclosin secreting ABC transporter, ATP binding protein.
 
 0.841
RD1_1124
Toxin secretion ABC transporter, ATP-binding component, putative.
 
 0.808
aggA
Agglutination protein, putative.
 
 
 0.791
RD1_3726
Toxin secretion ABC transporter, ATP binding component, putative.
 
 0.791
RD1_3460
Calcium binding hemolysin protein, putative.
 
  
 0.759
RD1_4034
Probable type I secretion protein.
 
  
 0.752
frpC-2
Iron-regulated protein frpC, putative.
 
  
 0.750
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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