STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_1745Conserved hypothetical protein. (106 aa)    
Predicted Functional Partners:
RD1_1640
Conserved hypothetical protein.
  
     0.775
RD1_3507
Conserved hypothetical protein.
  
     0.772
RD1_4082
Conserved domain protein.
  
     0.772
RD1_2030
Conserved hypothetical protein.
  
     0.770
RD1_2826
Hypothetical protein.
  
     0.765
RD1_1664
Hypothetical protein.
  
     0.764
RD1_1186
Rhomboid family protein.
  
     0.762
RD1_2621
Acyl carrier protein.
  
     0.760
RD1_0186
Hypothetical protein.
  
     0.758
RD1_3010
Conserved hypothetical protein.
  
     0.756
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.