STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_1779Conserved hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (412 aa)    
Predicted Functional Partners:
RD1_1778
AcrB/AcrD/AcrF family protein, putative; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.966
RD1_2241
Permease, putative.
  
 
 0.827
RD1_3421
Putative acriflavine resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.811
RD1_3422
Efflux transporter, RND family, MFP subunit, putative.
  
     0.721
RD1_1777
Conserved domain protein.
       0.563
RD1_1780
Hypothetical protein.
       0.543
mexF
RND multidrug efflux transporter MexF.
 
 
 0.507
acrF
RND multidrug efflux transporter protein.
 
 
 0.504
acrD
Acriflavin resistance protein D; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.499
RD1_1742
Type I secretion outer membrane protein, TolC family, putative.
 
 
 0.494
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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