Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
fdxFerredoxin VI. (107 aa)    
Predicted Functional Partners:
RD1_0947
Pyridine nucleotide-disulphide oxidoreductase, putative.
 
 
 0.971
RD1_2606
Conserved hypothetical protein.
  
 0.959
fdhB-2
Formate dehydrogenase, beta subunit.
  
 
 0.936
hesB
HesB-like iron-sulfur cluster assembly protein, putative; Belongs to the HesB/IscA family.
 
 0.876
RD1_1926
FG-GAP repeat domain protein.
       0.851
dnaK
Chaperone protein DnaK, putative; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.768
nifS
Cysteine desulfurase.
 
 0.729
hup
DNA-binding protein HU; Belongs to the bacterial histone-like protein family.
   
  
 0.727
nifS-2
Cysteine desulfurase.
 
 0.724
acnA
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
   
  
 0.682
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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