Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RD1_2004Transcriptional regulator, LysR family, putative; Belongs to the LysR transcriptional regulatory family. (291 aa)    
Predicted Functional Partners:
RD1_1317
Transcriptional regulator, LysR family, putative; Belongs to the LysR transcriptional regulatory family.
  
     0.567
lysR
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.562
RD1_2988
Transcriptional regulator, LysR family, putative; Belongs to the LysR transcriptional regulatory family.
  
     0.560
RD1_2003
Hypothetical protein.
       0.552
RD1_3397
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.517
RD1_2787
Transcriptional regulator, TetR family, putative.
  
 
   0.505
RD1_1134
Transcriptional regulator, LysR family, putative; Belongs to the LysR transcriptional regulatory family.
  
     0.411
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.