STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_2177Conserved hypothetical protein. (254 aa)    
Predicted Functional Partners:
RD1_2176
Conserved hypothetical protein.
 
   
 0.935
RD1_2178
Transcription regulator, RpiR family, putative.
 
  
 0.904
RD1_2175
TRAP dicarboxylate transporter, DctM subunit, putative.
 
     0.901
RD1_2174
Periplasmic mannitol-binding protein, putative.
 
     0.862
ipuC
Gamma-glutamylisopropylamide synthetase, putative; Belongs to the glutamine synthetase family.
 
  
 0.837
RD1_2172
Aldehyde dehydrogenase, putative; Belongs to the aldehyde dehydrogenase family.
 
     0.831
gbd
NAD-dependent 4-hydroxybutyrate dehydrogenase.
 
   
 0.686
RD1_1498
Transcriptional regulator, RpiR family, putative.
 
  
 0.610
RD1_1006
Conserved hypothetical protein.
      0.537
hutF
Formiminoglutamate deiminase, putative.
     
  0.499
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.