STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bglABeta-glucosidase; Methylamine utilization protein MauG, putative. (437 aa)    
Predicted Functional Partners:
aglA
Alpha-glucosidase; Alpha-glucoside transporter, permease protein AglG.
 
 
 0.936
glk
Glucokinase, putative; Belongs to the bacterial glucokinase family.
      0.902
RD1_2320
Transcriptional regulator, putative.
   
 0.830
aglE
Alpha-glucoside transporter, periplasmic binding protein AglE.
 
    0.773
aglF
Alpha-glucoside transporter, permease protein AglF.
 
  
 0.654
RD1_2321
Hypothetical protein.
       0.555
RD1_1011
Hypothetical protein.
    
 0.492
rpiB
Ribose-5-phosphate isomerase B, putative.
  
  
 0.492
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
     
 0.459
rafA
Alpha-galactosidase.
 
   
 0.406
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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