STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aglEAlpha-glucoside transporter, periplasmic binding protein AglE. (450 aa)    
Predicted Functional Partners:
aglF
Alpha-glucoside transporter, permease protein AglF.
 
 0.987
aglK
Alpha-glucoside transporter, ATP-binding protein AglK; Belongs to the ABC transporter superfamily.
 
  0.909
RD1_0517
Sugar ABC transporter, ATP-binding protein, putative; Belongs to the ABC transporter superfamily.
  
  0.871
gltK
Glucose ABC transporter, ATP-binding subunit.
  
  0.871
RD1_3622
SN-glycerol-3-phosphate ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
  0.871
RD1_3635
Sugar ABC transporter, ATP-binding protein, putative; Belongs to the ABC transporter superfamily.
  
  0.871
ugpC-2
SN-glycerol-3-phosphate transport ATP-binding protein; Belongs to the ABC transporter superfamily.
  
  0.871
algS
Alginate ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
  0.871
RD1_3739
Putative sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
  0.871
RD1_3880
Sugar ABC transporter, ATP-binding protein, putative; Belongs to the ABC transporter superfamily.
  
  0.871
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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