STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_2424Amidohydrolase family protein. (503 aa)    
Predicted Functional Partners:
mtnP
Methylthioadenosine phosphorylase, putative; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates; Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.
  
 
 0.913
tral
Autoinducer synthesis protein Tral, putative.
     
  0.900
btpA
Photosystem I biogenesis protein, putative.
 
     0.839
hyuE-3
Hydantoin racemase, putative.
 
     0.828
RD1_2418
Glucosamine--fructose-6-phosphate aminotransferase, putative.
 
   
 0.823
rbsK-2
Ribokinase, putative.
 
     0.815
RD1_2421
Polysaccharide deacetylase family protein, putative.
     
 0.782
RD1_2422
Conserved hypothetical protein.
     
 0.779
RD1_2416
Extracellular solute-binding protein, putative.
 
     0.635
RD1_2428
ABC transporter, substrate-binding protein, putative.
 
     0.564
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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