Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RD1_0475 | RD1_2524 | RD1_0475 | RD1_2524 | Beta-carotene ketolase, putative. | Membrane protein, putative. | 0.469 |
RD1_2520 | RD1_2521 | RD1_2520 | RD1_2521 | Oxidoreductase, putative. | Conserved hypothetical protein. | 0.527 |
RD1_2520 | RD1_2522 | RD1_2520 | RD1_2522 | Oxidoreductase, putative. | Hypothetical protein. | 0.514 |
RD1_2520 | RD1_2524 | RD1_2520 | RD1_2524 | Oxidoreductase, putative. | Membrane protein, putative. | 0.456 |
RD1_2520 | lcdH | RD1_2520 | RD1_2523 | Oxidoreductase, putative. | 3-hydroxyacyl-CoA dehydrogenase, putative; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine. | 0.511 |
RD1_2521 | RD1_2520 | RD1_2521 | RD1_2520 | Conserved hypothetical protein. | Oxidoreductase, putative. | 0.527 |
RD1_2521 | RD1_2522 | RD1_2521 | RD1_2522 | Conserved hypothetical protein. | Hypothetical protein. | 0.705 |
RD1_2521 | RD1_2524 | RD1_2521 | RD1_2524 | Conserved hypothetical protein. | Membrane protein, putative. | 0.476 |
RD1_2521 | lcdH | RD1_2521 | RD1_2523 | Conserved hypothetical protein. | 3-hydroxyacyl-CoA dehydrogenase, putative; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine. | 0.949 |
RD1_2522 | RD1_2520 | RD1_2522 | RD1_2520 | Hypothetical protein. | Oxidoreductase, putative. | 0.514 |
RD1_2522 | RD1_2521 | RD1_2522 | RD1_2521 | Hypothetical protein. | Conserved hypothetical protein. | 0.705 |
RD1_2522 | RD1_2524 | RD1_2522 | RD1_2524 | Hypothetical protein. | Membrane protein, putative. | 0.559 |
RD1_2522 | lcdH | RD1_2522 | RD1_2523 | Hypothetical protein. | 3-hydroxyacyl-CoA dehydrogenase, putative; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine. | 0.838 |
RD1_2524 | RD1_0475 | RD1_2524 | RD1_0475 | Membrane protein, putative. | Beta-carotene ketolase, putative. | 0.469 |
RD1_2524 | RD1_2520 | RD1_2524 | RD1_2520 | Membrane protein, putative. | Oxidoreductase, putative. | 0.456 |
RD1_2524 | RD1_2521 | RD1_2524 | RD1_2521 | Membrane protein, putative. | Conserved hypothetical protein. | 0.476 |
RD1_2524 | RD1_2522 | RD1_2524 | RD1_2522 | Membrane protein, putative. | Hypothetical protein. | 0.559 |
RD1_2524 | lcdH | RD1_2524 | RD1_2523 | Membrane protein, putative. | 3-hydroxyacyl-CoA dehydrogenase, putative; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine. | 0.559 |
lcdH | RD1_2520 | RD1_2523 | RD1_2520 | 3-hydroxyacyl-CoA dehydrogenase, putative; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine. | Oxidoreductase, putative. | 0.511 |
lcdH | RD1_2521 | RD1_2523 | RD1_2521 | 3-hydroxyacyl-CoA dehydrogenase, putative; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine. | Conserved hypothetical protein. | 0.949 |
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