STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_2619Peptidoglycan binding domain protein, putative. (537 aa)    
Predicted Functional Partners:
RD1_2617
Conserved hypothetical protein.
 
   
 0.889
RD1_2621
Acyl carrier protein.
 
     0.827
lpxD
UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase.
       0.800
RD1_2623
Beta-ketoacyl synthase family protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
     
 0.737
RD1_2618
Hypothetical protein.
       0.561
RD1_0404
ErfK/YbiS/YcfS/YnhG family protein.
  
   
 0.508
ribD
Riboflavin biosynthesis protein ribD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
       0.504
RD1_0402
ErfK/YbiS/YcfS/YnhG family protein.
 
  
 0.489
mepA
Murein endopeptidase.
  
     0.482
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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