STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuAC-2Glycine betaine transporter, substrate-binding protein. (322 aa)    
Predicted Functional Partners:
opuAB-2
Glycine betaine transporter, permease protein.
 
 0.998
RD1_1841
Glycine betaine/L-proline transport system permease, putative.
 
 0.996
opuAA-2
Glycine betaine transporter, ATP-binding protein.
 
 0.994
opuAA
Glycine betaine transporter, ATP-binding protein.
 
 0.983
opuAB
Glycine betaine transporter, permease protein.
 
 0.977
RD1_1839
Glycine betaine/L-proline ABC transporter, substrate binding protein, putative.
  
  
 0.939
opuAC
Glycine betaine transporter, substrate-binding protein.
  
  
 
0.924
RD1_2929
Hypothetical protein.
       0.572
metE
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, putative.
      
 0.545
ccmC
Heme exporter protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
      
 0.544
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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