STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_3003Conserved hypothetical protein. (164 aa)    
Predicted Functional Partners:
RD1_3002
Peptidase, M23/M37 family, putative.
 
   
 0.907
RD1_2079
Conserved hypothetical protein.
  
     0.632
RD1_1745
Conserved hypothetical protein.
  
     0.611
bcp-2
Bacterioferritin comigratory protein.
     
 0.586
RD1_1368
Conserved hypothetical protein.
  
     0.575
RD1_3001
Conserved hypothetical protein.
       0.566
RD1_2853
Conserved hypothetical protein.
  
     0.528
mreC
Rod shape-determining protein; Involved in formation and maintenance of cell shape.
 
     0.518
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
     0.517
RD1_1902
Conserved hypothetical protein.
  
     0.500
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.