STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_3188Trimethylamine methyltransferase family protein; Belongs to the trimethylamine methyltransferase family. (512 aa)    
Predicted Functional Partners:
tmd
Trimethylamine dehydrogenase.
 
  
  0.914
RD1_0632
Flavin-containing monooxygenase.
     
  0.900
dmsA
Dimethyl sulfoxide reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.900
RD1_0019
Dimethylglycine dehydrogenase, putative; Belongs to the GcvT family.
 
     0.696
RD1_2716
Conserved hypothetical protein.
 
     0.695
RD1_0056
Hydantoinase/oxoprolinase, putative.
  
     0.683
RD1_0612
acyl-CoA synthetase, putative.
  
     0.663
RD1_3054
Conserved hypothetical protein.
 
     0.569
RD1_3187
Hypothetical protein.
       0.564
RD1_3189
Hypothetical protein.
       0.563
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.