Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RD1_3207GGDEF/EAL domain protein. (681 aa)    
Predicted Functional Partners:
RD1_3107
Probable regulator protein containing CheR-and CheB-like domains.
 
 
 0.941
RD1_3577
Sensory box histidine kinase/response regulator, putative.
 
 0.938
RD1_1456
EAL domain protein.
 
 
0.840
RD1_0357
Hybrid sensory histidine kinase, putative.
 
 0.836
RD1_0936
Putative ammonium ABC transporter, permease component.
 
    
 0.821
RD1_0413
Response regulator.
  
 
 0.761
cheR
Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
  
 0.751
RD1_1969
Sensory box protein, putative.
   
 
 0.746
RD1_3595
Two-component hybrid sensor and regulator, putative.
  
 
 0.740
RD1_1488
Histidine kinase, putative.
 
 
 0.723
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.