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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_3207GGDEF/EAL domain protein. (681 aa)    
Predicted Functional Partners:
RD1_3107
Probable regulator protein containing CheR-and CheB-like domains.
 
 
 0.953
RD1_3577
Sensory box histidine kinase/response regulator, putative.
 
 0.941
RD1_1456
EAL domain protein.
 
 
0.848
RD1_1969
Sensory box protein, putative.
   
 
 0.847
RD1_0357
Hybrid sensory histidine kinase, putative.
 
 0.839
RD1_0936
Putative ammonium ABC transporter, permease component.
 
    
 0.821
RD1_1968
Sensory box protein, putative.
  
 
 0.796
RD1_0413
Response regulator.
 
 
 0.791
RD1_3595
Two-component hybrid sensor and regulator, putative.
 
 
 0.781
RD1_1488
Histidine kinase, putative.
 
 
 0.779
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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