STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_3315ABC transporter, permease protein, putative. (335 aa)    
Predicted Functional Partners:
RD1_3316
ABC transporter, permease protein, putative.
  
 0.972
RD1_3314
Peptide ABC transporter, periplasmic substrate-binding protein; ABC transporter, ATP-binding subunit, putative.
 
 
 0.920
RD1_2222
Peptide ABC transporter, ATP-binding protein, putative; Belongs to the ABC transporter superfamily.
 
 0.889
RD1_2221
Oligopeptide ABC transporter, ATP-binding subunit; Belongs to the ABC transporter superfamily.
 
 0.879
nikC
Nickel transport system permease protein nikC.
  
 0.873
RD1_1977
ABC transporter, permease protein, putative.
  
 0.868
RD1_2223
Peptide ABC transporter, permease protein, putative.
  
 0.865
RD1_1099
Oligopeptide ABC transporter, permease protein.
  
 0.853
RD1_1102
ABC transporter ATP-binding protein, putative; Belongs to the ABC transporter superfamily.
  
 0.801
RD1_1266
Peptide ABC transporter, ATP-binding protein, putative; Belongs to the ABC transporter superfamily.
  
 0.762
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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