STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_3603Conserved hypothetical protein. (109 aa)    
Predicted Functional Partners:
fmdA-2
Amidase.
 
   
 0.911
RD1_3601
ABC transporter, ATP-binding protein, putative.
 
     0.886
RD1_3599
Branched-chain amino acid ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family.
 
     0.884
RD1_3600
Branched-chain amino acid ABC transport, ATP-binding protein, putative.
 
     0.878
RD1_3598
Branched-chain amino acid transport system permease component, putative; Belongs to the binding-protein-dependent transport system permease family.
 
    0.873
RD1_3595
Two-component hybrid sensor and regulator, putative.
 
     0.857
RD1_3596
ABC transporter, substrate-binding protein, putative.
 
     0.851
RD1_3594
Two-component response regulator, putative.
 
     0.818
fmdA
Formamidase, putative.
 
   
 0.457
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.