STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_3609C4-dicarboxylate transport system, substrate-binding protein, putative. (324 aa)    
Predicted Functional Partners:
RD1_3608
TRAP transporter, DctQ-like membrane protein, putative.
 
  
 0.917
RD1_3607
C4-dicarboxylate transport system, permease protein, putative.
 
    0.909
dctM-3
TRAP dicarboxylate transporter, DctM subunit, putative.
 
    0.783
tauM
C4-dicarboxylate transport system, large permease protein, putative.
 
    0.777
RD1_1049
TRAP dicarboxylate transporter, DctM subunit.
 
    0.774
RD1_1542
TRAP dicarboxylate transporter, DctM subunit.
 
    0.770
dctM-2
TRAP-type transporter, DctM subunit, putative.
 
    0.770
RD1_0740
TRAP-type C4-dicarboxylate transport protein, permease component.
 
    0.741
RD1_2187
TRAP transporter, DctM subunit, putative.
 
    0.710
tauL
C4-dicarboxylate transport system, small permease protein, putative.
 
  
 0.572
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.