Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RD1_3670 | gcvH | RD1_3670 | RD1_1223 | Pyridine nucleotide-disulfide oxidoreductase, putative. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.963 |
| RD1_3670 | gcvP | RD1_3670 | RD1_1225 | Pyridine nucleotide-disulfide oxidoreductase, putative. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.952 |
| RD1_3670 | gcvT | RD1_3670 | RD1_1222 | Pyridine nucleotide-disulfide oxidoreductase, putative. | Aminomethyltransferase. | 0.931 |
| RD1_3670 | lpdA-2 | RD1_3670 | RD1_2995 | Pyridine nucleotide-disulfide oxidoreductase, putative. | Dihydrolipoamide dehydrogenase. | 0.927 |
| RD1_3670 | pdhA | RD1_3670 | RD1_3011 | Pyridine nucleotide-disulfide oxidoreductase, putative. | Pyruvate dehydrogenase complex, E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 0.974 |
| RD1_3670 | pdhB | RD1_3670 | RD1_2926 | Pyridine nucleotide-disulfide oxidoreductase, putative. | Pyruvate dehydrogenase E1 component, beta subunit, putative. | 0.997 |
| RD1_3670 | pdhB-2 | RD1_3670 | RD1_3013 | Pyridine nucleotide-disulfide oxidoreductase, putative. | Pyruvate dehydrogenase complex, E1 component, beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | 0.999 |
| RD1_3670 | pdhC | RD1_3670 | RD1_3014 | Pyridine nucleotide-disulfide oxidoreductase, putative. | Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 0.988 |
| RD1_3670 | sucA | RD1_3670 | RD1_1609 | Pyridine nucleotide-disulfide oxidoreductase, putative. | Alpha-ketoglutarate dehydrogenase. | 0.967 |
| RD1_3670 | sucB | RD1_3670 | RD1_1608 | Pyridine nucleotide-disulfide oxidoreductase, putative. | Dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). | 0.987 |
| gcvH | RD1_3670 | RD1_1223 | RD1_3670 | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | Pyridine nucleotide-disulfide oxidoreductase, putative. | 0.963 |
| gcvH | gcvP | RD1_1223 | RD1_1225 | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.999 |
| gcvH | gcvT | RD1_1223 | RD1_1222 | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | Aminomethyltransferase. | 0.999 |
| gcvH | lpdA-2 | RD1_1223 | RD1_2995 | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | Dihydrolipoamide dehydrogenase. | 0.967 |
| gcvH | pdhA | RD1_1223 | RD1_3011 | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | Pyruvate dehydrogenase complex, E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 0.550 |
| gcvH | pdhB | RD1_1223 | RD1_2926 | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | Pyruvate dehydrogenase E1 component, beta subunit, putative. | 0.820 |
| gcvH | pdhB-2 | RD1_1223 | RD1_3013 | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | Pyruvate dehydrogenase complex, E1 component, beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | 0.876 |
| gcvH | pdhC | RD1_1223 | RD1_3014 | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 0.633 |
| gcvH | sucA | RD1_1223 | RD1_1609 | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | Alpha-ketoglutarate dehydrogenase. | 0.774 |
| gcvH | sucB | RD1_1223 | RD1_1608 | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | Dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). | 0.633 |
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