Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RD1_1336 | RD1_3674 | RD1_1336 | RD1_3674 | Aminotransferase, putative. | Pyridoxal-phosphate dependent enzyme. | 0.915 |
RD1_1336 | cysB | RD1_1336 | RD1_2299 | Aminotransferase, putative. | Cysteine synthase. | 0.915 |
RD1_1336 | cysK | RD1_1336 | RD1_2941 | Aminotransferase, putative. | O-acetylserine sulfhydrylase. | 0.915 |
RD1_1336 | mdeA | RD1_1336 | RD1_2640 | Aminotransferase, putative. | Methionine gamma-lyase. | 0.940 |
RD1_1336 | metZ | RD1_1336 | RD1_1939 | Aminotransferase, putative. | O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. | 0.941 |
RD1_1336 | tyrB | RD1_1336 | RD1_0935 | Aminotransferase, putative. | Aromatic amino acid aminotransferase. | 0.900 |
RD1_3674 | RD1_1336 | RD1_3674 | RD1_1336 | Pyridoxal-phosphate dependent enzyme. | Aminotransferase, putative. | 0.915 |
RD1_3674 | cysB | RD1_3674 | RD1_2299 | Pyridoxal-phosphate dependent enzyme. | Cysteine synthase. | 0.917 |
RD1_3674 | cysE | RD1_3674 | RD1_1129 | Pyridoxal-phosphate dependent enzyme. | Serine acetyltransferase. | 0.960 |
RD1_3674 | cysE-2 | RD1_3674 | RD1_3015 | Pyridoxal-phosphate dependent enzyme. | Serine acetyltransferase. | 0.960 |
RD1_3674 | cysI | RD1_3674 | RD1_2966 | Pyridoxal-phosphate dependent enzyme. | Sulfite reductase. | 0.934 |
RD1_3674 | cysK | RD1_3674 | RD1_2941 | Pyridoxal-phosphate dependent enzyme. | O-acetylserine sulfhydrylase. | 0.911 |
RD1_3674 | mdeA | RD1_3674 | RD1_2640 | Pyridoxal-phosphate dependent enzyme. | Methionine gamma-lyase. | 0.959 |
RD1_3674 | metZ | RD1_3674 | RD1_1939 | Pyridoxal-phosphate dependent enzyme. | O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. | 0.959 |
RD1_3674 | serC | RD1_3674 | RD1_0196 | Pyridoxal-phosphate dependent enzyme. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. | 0.915 |
RD1_3674 | tyrB | RD1_3674 | RD1_0935 | Pyridoxal-phosphate dependent enzyme. | Aromatic amino acid aminotransferase. | 0.915 |
cysB | RD1_1336 | RD1_2299 | RD1_1336 | Cysteine synthase. | Aminotransferase, putative. | 0.915 |
cysB | RD1_3674 | RD1_2299 | RD1_3674 | Cysteine synthase. | Pyridoxal-phosphate dependent enzyme. | 0.917 |
cysB | cysE | RD1_2299 | RD1_1129 | Cysteine synthase. | Serine acetyltransferase. | 0.972 |
cysB | cysE-2 | RD1_2299 | RD1_3015 | Cysteine synthase. | Serine acetyltransferase. | 0.972 |
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