STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
algSAlginate ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (362 aa)    
Predicted Functional Partners:
RD1_3719
Sugar ABC transporter, permease protein, putative.
 
   0.924
RD1_3718
Sugar ABC transporter, permease protein, putative.
 
 0.920
RD1_1731
Putative sugar ABC transporter, permease protein.
 
 0.912
RD1_1485
Sugar ABC transporter, permease protein, putative.
 
  0.904
aglF
Alpha-glucoside transporter, permease protein AglF.
 
  0.902
RD1_1484
Sugar ABC transporter, permease protein, putative.
 
 0.901
RD1_0519
Sugar ABC transporter, permease protein, putative.
 
  0.892
RD1_1730
Putative sugar ABC transporter, permease protein.
 
  0.891
RD1_0521
Putative sugar ABC transporter, periplasmic sugar-binding protein.
  
  0.871
RD1_1486
Periplasmic sorbitol-binding protein, putative.
  
  0.871
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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