STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_3780Conserved hypothetical protein. (132 aa)    
Predicted Functional Partners:
RD1_3781
Conserved hypothetical protein.
 
 
 0.991
RD1_3782
Transcriptional regulator, AraC family, putative.
       0.678
RD1_1752
Aminotransferase, putative.
  
     0.526
dapA
Dihydrodipicolinate synthase, putative; Belongs to the DapA family.
 
     0.481
RD1_2049
malate/L-lactate dehydrogenase, putative; Belongs to the LDH2/MDH2 oxidoreductase family.
 
   
 0.476
hemA-4
5-aminolevulinic acid synthase.
       0.471
RD1_3779
Hypothetical protein.
       0.471
RD1_3783
Conserved hypothetical protein; Belongs to the hyi family.
       0.429
RD1_3784
Class II aldolase, putative.
       0.429
RD1_3785
Conserved domain protein.
       0.429
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.