STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_4136Monooxygenase, putative. (431 aa)    
Predicted Functional Partners:
RD1_4138
Endoribonuclease L-PSP family protein, putative.
    0.964
RD1_4140
Transcriptional regulator, LysR family, putative; Belongs to the LysR transcriptional regulatory family.
     0.916
RD1_4139
Conserved hypothetical protein.
 
     0.909
tmd-2
Trimethylamine dehydrogenase.
 
  
 0.784
tmd
Trimethylamine dehydrogenase.
 
  
 0.754
RD1_1031
Rieske 2Fe-2S domain protein.
 
     0.619
argE-2
Acetylornithine deacetylase, putative.
 
   
 0.613
RD1_4137
Hypothetical protein.
       0.519
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.