Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GATD1Glutamine amidotransferase like class 1 domain containing 1. (141 aa)    
Predicted Functional Partners:
PPP1R21
Protein phosphatase 1 regulatory subunit 21.
    
   0.957
ENSCAPP00000000013
annotation not available
   
   0.924
TNNI3
Troponin I3, cardiac type.
   
 0.849
TNNI1
Troponin I1, slow skeletal type.
   
 0.849
TNNI2
Troponin I2, fast skeletal type.
   
 0.849
C12orf4
Chromosome 12 open reading frame 4.
    
   0.844
ENSCAPP00000006875
annotation not available
   
 0.733
TPM2
Tropomyosin 2.
   
 0.733
ENSCAPP00000014012
annotation not available
   
 0.733
FBXO22
F-box protein 22.
   
 0.733
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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