TBCA protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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[Homology]

Score

TBCA

Tubulin folding cofactor A. (130 aa)

Predicted Functional Partners:

TBCD

0.978

FBN2

0.812

ENSCAPP00000011285

0.795

UBA2

0.793

ENSCAPP00000004061

0.757

ENSCAPP00000001394

0.751

ENSCAPP00000009399

0.751

ENSCAPP00000016272

0.751

TUBB1

0.740

TUBB6

0.737

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAPP00000001394	TBCA	ENSCAPP00000001394	ENSCAPP00000000049	annotation not available	Tubulin folding cofactor A.	0.751
ENSCAPP00000001394	TBCD	ENSCAPP00000001394	ENSCAPP00000002151	annotation not available	Tubulin folding cofactor D.	0.654
ENSCAPP00000001394	TUBB1	ENSCAPP00000001394	ENSCAPP00000000296	annotation not available	Tubulin beta 1 class VI.	0.515
ENSCAPP00000001394	TUBB6	ENSCAPP00000001394	ENSCAPP00000018416	annotation not available	Tubulin beta 6 class V.	0.872
ENSCAPP00000004061	TBCA	ENSCAPP00000004061	ENSCAPP00000000049	annotation not available	Tubulin folding cofactor A.	0.757
ENSCAPP00000004061	TBCD	ENSCAPP00000004061	ENSCAPP00000002151	annotation not available	Tubulin folding cofactor D.	0.665
ENSCAPP00000009399	TBCA	ENSCAPP00000009399	ENSCAPP00000000049	annotation not available	Tubulin folding cofactor A.	0.751
ENSCAPP00000009399	TBCD	ENSCAPP00000009399	ENSCAPP00000002151	annotation not available	Tubulin folding cofactor D.	0.654
ENSCAPP00000009399	TUBB1	ENSCAPP00000009399	ENSCAPP00000000296	annotation not available	Tubulin beta 1 class VI.	0.515
ENSCAPP00000009399	TUBB6	ENSCAPP00000009399	ENSCAPP00000018416	annotation not available	Tubulin beta 6 class V.	0.872
ENSCAPP00000011285	TBCA	ENSCAPP00000011285	ENSCAPP00000000049	annotation not available	Tubulin folding cofactor A.	0.795
ENSCAPP00000011285	TBCD	ENSCAPP00000011285	ENSCAPP00000002151	annotation not available	Tubulin folding cofactor D.	0.825
ENSCAPP00000011285	TUBB6	ENSCAPP00000011285	ENSCAPP00000018416	annotation not available	Tubulin beta 6 class V.	0.403
ENSCAPP00000016272	TBCA	ENSCAPP00000016272	ENSCAPP00000000049	annotation not available	Tubulin folding cofactor A.	0.751
ENSCAPP00000016272	TBCD	ENSCAPP00000016272	ENSCAPP00000002151	annotation not available	Tubulin folding cofactor D.	0.654
ENSCAPP00000016272	TUBB1	ENSCAPP00000016272	ENSCAPP00000000296	annotation not available	Tubulin beta 1 class VI.	0.515
ENSCAPP00000016272	TUBB6	ENSCAPP00000016272	ENSCAPP00000018416	annotation not available	Tubulin beta 6 class V.	0.872
FBN2	TBCA	ENSCAPP00000018422	ENSCAPP00000000049	Fibrillin 2.	Tubulin folding cofactor A.	0.812
TBCA	ENSCAPP00000001394	ENSCAPP00000000049	ENSCAPP00000001394	Tubulin folding cofactor A.	annotation not available	0.751
TBCA	ENSCAPP00000004061	ENSCAPP00000000049	ENSCAPP00000004061	Tubulin folding cofactor A.	annotation not available	0.757