STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF4Bpre-mRNA processing factor 4B. (1002 aa)    
Predicted Functional Partners:
PNN
Pinin, desmosome associated protein.
   
 0.994
PRPF6
pre-mRNA processing factor 6.
    
 
 0.980
ZC3H18
Zinc finger CCCH-type containing 18.
   
   0.963
RBM25
RNA binding motif protein 25.
   
  0.960
PRPF8
pre-mRNA processing factor 8.
    
 
 0.959
SF3B1
Splicing factor 3b subunit 1.
   
 
 0.941
PRPF31
pre-mRNA processing factor 31.
    
 
 0.940
PRPF4
pre-mRNA processing factor 4.
    
 
 0.928
EIF4A3
Eukaryotic translation initiation factor 4A3.
    
  0.924
USP39
Ubiquitin specific peptidase 39.
    
   0.908
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.