Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPIN1Spindlin 1. (262 aa)    
Predicted Functional Partners:
SPINDOC
Spindlin interactor and repressor of chromatin binding.
    
 
 0.977
CGGBP1
CGG triplet repeat binding protein 1.
    
   0.922
TOPORS
TOP1 binding arginine/serine rich protein.
    
 
 0.920
SETDB1
SET domain bifurcated histone lysine methyltransferase 1.
      
 0.657
SSRP1
Structure specific recognition protein 1.
    
 
 0.618
TDRD3
Tudor domain containing 3.
      
 0.576
FOXA3
Forkhead box A3.
      
 0.571
ENSCAPP00000010890
annotation not available
      
 0.563
ENSCAPP00000007569
annotation not available
    
   0.477
ARHGEF9
Cdc42 guanine nucleotide exchange factor 9.
   
  
 0.456
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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