GSTCD protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GSTCD

Glutathione S-transferase C-terminal domain containing. (631 aa)

Predicted Functional Partners:

EEFSEC

0.769

RIBC2

0.767

ENSCAPP00000015257

0.748

ENSCAPP00000004283

0.722

ZNF367

0.715

ENSCAPP00000004389

0.687

DEPDC1B

0.679

MTCL1

0.659

CEP85

0.657

ENSCAPP00000003597

0.616

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEP85	DEPDC1B	ENSCAPP00000007722	ENSCAPP00000000483	Centrosomal protein 85.	DEP domain containing 1B.	0.624
CEP85	ENSCAPP00000003597	ENSCAPP00000007722	ENSCAPP00000003597	Centrosomal protein 85.	annotation not available	0.570
CEP85	ENSCAPP00000004283	ENSCAPP00000007722	ENSCAPP00000004283	Centrosomal protein 85.	annotation not available	0.698
CEP85	ENSCAPP00000015257	ENSCAPP00000007722	ENSCAPP00000015257	Centrosomal protein 85.	annotation not available	0.740
CEP85	GSTCD	ENSCAPP00000007722	ENSCAPP00000001003	Centrosomal protein 85.	Glutathione S-transferase C-terminal domain containing.	0.657
CEP85	RIBC2	ENSCAPP00000007722	ENSCAPP00000004152	Centrosomal protein 85.	RIB43A domain with coiled-coils 2.	0.692
CEP85	ZNF367	ENSCAPP00000007722	ENSCAPP00000002377	Centrosomal protein 85.	Zinc finger protein 367.	0.671
DEPDC1B	CEP85	ENSCAPP00000000483	ENSCAPP00000007722	DEP domain containing 1B.	Centrosomal protein 85.	0.624
DEPDC1B	ENSCAPP00000003597	ENSCAPP00000000483	ENSCAPP00000003597	DEP domain containing 1B.	annotation not available	0.580
DEPDC1B	ENSCAPP00000004283	ENSCAPP00000000483	ENSCAPP00000004283	DEP domain containing 1B.	annotation not available	0.760
DEPDC1B	ENSCAPP00000015257	ENSCAPP00000000483	ENSCAPP00000015257	DEP domain containing 1B.	annotation not available	0.712
DEPDC1B	GSTCD	ENSCAPP00000000483	ENSCAPP00000001003	DEP domain containing 1B.	Glutathione S-transferase C-terminal domain containing.	0.679
DEPDC1B	RIBC2	ENSCAPP00000000483	ENSCAPP00000004152	DEP domain containing 1B.	RIB43A domain with coiled-coils 2.	0.687
DEPDC1B	ZNF367	ENSCAPP00000000483	ENSCAPP00000002377	DEP domain containing 1B.	Zinc finger protein 367.	0.687
EEFSEC	GSTCD	ENSCAPP00000000098	ENSCAPP00000001003	Eukaryotic elongation factor, selenocysteine-tRNA specific.	Glutathione S-transferase C-terminal domain containing.	0.769
EEFSEC	MTCL1	ENSCAPP00000000098	ENSCAPP00000001318	Eukaryotic elongation factor, selenocysteine-tRNA specific.	Microtubule crosslinking factor 1.	0.530
ENSCAPP00000003597	CEP85	ENSCAPP00000003597	ENSCAPP00000007722	annotation not available	Centrosomal protein 85.	0.570
ENSCAPP00000003597	DEPDC1B	ENSCAPP00000003597	ENSCAPP00000000483	annotation not available	DEP domain containing 1B.	0.580
ENSCAPP00000003597	ENSCAPP00000004283	ENSCAPP00000003597	ENSCAPP00000004283	annotation not available	annotation not available	0.657
ENSCAPP00000003597	ENSCAPP00000015257	ENSCAPP00000003597	ENSCAPP00000015257	annotation not available	annotation not available	0.667