STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000001012annotation not available (200 aa)    
Predicted Functional Partners:
TRAF6
TNF receptor associated factor 6.
    
 0.993
SART3
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 
 0.978
PRPF3
pre-mRNA processing factor 3.
   
 
 0.962
USP15
Ubiquitin specific peptidase 15.
   
   0.961
USP11
Ubiquitin specific peptidase 11.
   
 
 0.936
ENSCAPP00000009473
annotation not available
    
 
 0.918
CTNNB1
Catenin beta 1.
    
 
 0.918
ENSCAPP00000008199
annotation not available
    
 
 0.904
TGFBR1
Transforming growth factor beta receptor 1.
    
 0.900
ENSCAPP00000013086
annotation not available
   
 0.889
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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