Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TNCTenascin C. (1947 aa)    
Predicted Functional Partners:
PTPRZ1
Protein tyrosine phosphatase receptor type Z1.
   
  0.963
ENSCAPP00000006020
annotation not available
   
 0.954
SVEP1
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.
    
 0.941
ITGA6
Integrin subunit alpha 6.
    
 0.935
ITGA7
Integrin subunit alpha 7.
    
 0.935
ITGA8
Integrin subunit alpha 8.
    
 0.935
SDC4
Syndecan 4.
     
 0.934
ITGA3
Integrin subunit alpha 3.
    
 0.933
ITGA2B
Integrin subunit alpha 2b.
    
 0.933
ITGA4
Integrin subunit alpha 4.
    
 0.933
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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