CTSB protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-expression

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[Homology]

Score

CTSB

Cathepsin B. (340 aa)

Predicted Functional Partners:

ENSCAPP00000015140

0.997

ENSCAPP00000007144

0.991

ENSCAPP00000010097

0.971

CTSA

0.965

CD74

0.959

ENSCAPP00000015540

0.953

CTSH

0.946

SERPINE1

0.936

VTN

0.935

LAMP1

0.935

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CD74	CTSA	ENSCAPP00000006497	ENSCAPP00000008367	CD74 molecule.	Cathepsin A.	0.476
CD74	CTSB	ENSCAPP00000006497	ENSCAPP00000001034	CD74 molecule.	Cathepsin B.	0.959
CD74	CTSH	ENSCAPP00000006497	ENSCAPP00000008163	CD74 molecule.	Cathepsin H.	0.692
CD74	ENSCAPP00000015540	ENSCAPP00000006497	ENSCAPP00000015540	CD74 molecule.	annotation not available	0.978
CTSA	CD74	ENSCAPP00000008367	ENSCAPP00000006497	Cathepsin A.	CD74 molecule.	0.476
CTSA	CTSB	ENSCAPP00000008367	ENSCAPP00000001034	Cathepsin A.	Cathepsin B.	0.965
CTSA	CTSH	ENSCAPP00000008367	ENSCAPP00000008163	Cathepsin A.	Cathepsin H.	0.914
CTSA	ENSCAPP00000007144	ENSCAPP00000008367	ENSCAPP00000007144	Cathepsin A.	annotation not available	0.881
CTSA	ENSCAPP00000015540	ENSCAPP00000008367	ENSCAPP00000015540	Cathepsin A.	annotation not available	0.896
CTSA	LAMP1	ENSCAPP00000008367	ENSCAPP00000012570	Cathepsin A.	Lysosomal associated membrane protein 1.	0.546
CTSB	CD74	ENSCAPP00000001034	ENSCAPP00000006497	Cathepsin B.	CD74 molecule.	0.959
CTSB	CTSA	ENSCAPP00000001034	ENSCAPP00000008367	Cathepsin B.	Cathepsin A.	0.965
CTSB	CTSH	ENSCAPP00000001034	ENSCAPP00000008163	Cathepsin B.	Cathepsin H.	0.946
CTSB	ENSCAPP00000007144	ENSCAPP00000001034	ENSCAPP00000007144	Cathepsin B.	annotation not available	0.991
CTSB	ENSCAPP00000010097	ENSCAPP00000001034	ENSCAPP00000010097	Cathepsin B.	annotation not available	0.971
CTSB	ENSCAPP00000015140	ENSCAPP00000001034	ENSCAPP00000015140	Cathepsin B.	annotation not available	0.997
CTSB	ENSCAPP00000015540	ENSCAPP00000001034	ENSCAPP00000015540	Cathepsin B.	annotation not available	0.953
CTSB	LAMP1	ENSCAPP00000001034	ENSCAPP00000012570	Cathepsin B.	Lysosomal associated membrane protein 1.	0.935
CTSB	SERPINE1	ENSCAPP00000001034	ENSCAPP00000000887	Cathepsin B.	Serpin family E member 1.	0.936
CTSB	VTN	ENSCAPP00000001034	ENSCAPP00000002091	Cathepsin B.	Vitronectin.	0.935