STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MARCHF1Membrane associated ring-CH-type finger 1. (289 aa)    
Predicted Functional Partners:
VCP
Valosin containing protein.
    
 0.702
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 0.699
UBE2G2
Ubiquitin conjugating enzyme E2 G2.
    
 0.654
FAF1
Fas associated factor 1.
    
 0.626
FAF2
Fas associated factor family member 2.
    
 0.626
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.539
C1QTNF12
C1q and TNF related 12.
    
 
 0.519
UBE2J2
Ubiquitin conjugating enzyme E2 J2.
    
 
 0.519
RNF145
Ring finger protein 145.
    
 0.493
AMFR
Autocrine motility factor receptor.
    
 0.493
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.