MDN1 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

MDN1

Midasin AAA ATPase 1. (4879 aa)

Predicted Functional Partners:

WDR12

0.995

MRTO4

0.986

FTSJ3

0.985

ENSCAPP00000014188

0.984

BOP1

0.982

GNL2

0.977

ENSCAPP00000010582

0.976

ENSCAPP00000018144

0.965

NOC2L

0.963

GTPBP4

0.961

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOP1	ENSCAPP00000010582	ENSCAPP00000002700	ENSCAPP00000010582	BOP1 ribosomal biogenesis factor.	annotation not available	0.999
BOP1	ENSCAPP00000014188	ENSCAPP00000002700	ENSCAPP00000014188	BOP1 ribosomal biogenesis factor.	annotation not available	0.999
BOP1	ENSCAPP00000018144	ENSCAPP00000002700	ENSCAPP00000018144	BOP1 ribosomal biogenesis factor.	annotation not available	0.981
BOP1	FTSJ3	ENSCAPP00000002700	ENSCAPP00000016842	BOP1 ribosomal biogenesis factor.	FtsJ RNA 2'-O-methyltransferase 3.	0.999
BOP1	GNL2	ENSCAPP00000002700	ENSCAPP00000017947	BOP1 ribosomal biogenesis factor.	G protein nucleolar 2.	0.998
BOP1	GTPBP4	ENSCAPP00000002700	ENSCAPP00000001224	BOP1 ribosomal biogenesis factor.	GTP binding protein 4.	0.997
BOP1	MDN1	ENSCAPP00000002700	ENSCAPP00000001056	BOP1 ribosomal biogenesis factor.	Midasin AAA ATPase 1.	0.982
BOP1	MRTO4	ENSCAPP00000002700	ENSCAPP00000011622	BOP1 ribosomal biogenesis factor.	MRT4 homolog, ribosome maturation factor.	0.999
BOP1	NOC2L	ENSCAPP00000002700	ENSCAPP00000004318	BOP1 ribosomal biogenesis factor.	NOC2 like nucleolar associated transcriptional repressor.	0.999
BOP1	WDR12	ENSCAPP00000002700	ENSCAPP00000017187	BOP1 ribosomal biogenesis factor.	WD repeat domain 12.	0.999
ENSCAPP00000010582	BOP1	ENSCAPP00000010582	ENSCAPP00000002700	annotation not available	BOP1 ribosomal biogenesis factor.	0.999
ENSCAPP00000010582	ENSCAPP00000014188	ENSCAPP00000010582	ENSCAPP00000014188	annotation not available	annotation not available	0.999
ENSCAPP00000010582	ENSCAPP00000018144	ENSCAPP00000010582	ENSCAPP00000018144	annotation not available	annotation not available	0.943
ENSCAPP00000010582	FTSJ3	ENSCAPP00000010582	ENSCAPP00000016842	annotation not available	FtsJ RNA 2'-O-methyltransferase 3.	0.999
ENSCAPP00000010582	GNL2	ENSCAPP00000010582	ENSCAPP00000017947	annotation not available	G protein nucleolar 2.	0.989
ENSCAPP00000010582	GTPBP4	ENSCAPP00000010582	ENSCAPP00000001224	annotation not available	GTP binding protein 4.	0.997
ENSCAPP00000010582	MDN1	ENSCAPP00000010582	ENSCAPP00000001056	annotation not available	Midasin AAA ATPase 1.	0.976
ENSCAPP00000010582	MRTO4	ENSCAPP00000010582	ENSCAPP00000011622	annotation not available	MRT4 homolog, ribosome maturation factor.	0.999
ENSCAPP00000010582	NOC2L	ENSCAPP00000010582	ENSCAPP00000004318	annotation not available	NOC2 like nucleolar associated transcriptional repressor.	0.999
ENSCAPP00000010582	WDR12	ENSCAPP00000010582	ENSCAPP00000017187	annotation not available	WD repeat domain 12.	0.999