ENSCAPP00000001066 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000001066

annotation not available (168 aa)

Predicted Functional Partners:

ENSCAPP00000009519

0.994

ENSCAPP00000005342

0.990

CUL5

0.989

RBX1

0.982

NAE1

0.963

CUL1

0.950

CUL3

0.941

ENSCAPP00000006499

0.921

ENSCAPP00000009955

0.921

DCUN1D2

0.918

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUL1	CUL3	ENSCAPP00000006453	ENSCAPP00000016657	Cullin 1.	Cullin 3.	0.979
CUL1	CUL5	ENSCAPP00000006453	ENSCAPP00000012653	Cullin 1.	Cullin 5.	0.571
CUL1	DCUN1D2	ENSCAPP00000006453	ENSCAPP00000000415	Cullin 1.	Defective in cullin neddylation 1 domain containing 2.	0.962
CUL1	ENSCAPP00000001066	ENSCAPP00000006453	ENSCAPP00000001066	Cullin 1.	annotation not available	0.950
CUL1	ENSCAPP00000005342	ENSCAPP00000006453	ENSCAPP00000005342	Cullin 1.	annotation not available	0.990
CUL1	ENSCAPP00000006499	ENSCAPP00000006453	ENSCAPP00000006499	Cullin 1.	annotation not available	0.966
CUL1	ENSCAPP00000009519	ENSCAPP00000006453	ENSCAPP00000009519	Cullin 1.	annotation not available	0.995
CUL1	ENSCAPP00000009955	ENSCAPP00000006453	ENSCAPP00000009955	Cullin 1.	annotation not available	0.966
CUL1	NAE1	ENSCAPP00000006453	ENSCAPP00000008998	Cullin 1.	NEDD8 activating enzyme E1 subunit 1.	0.930
CUL1	RBX1	ENSCAPP00000006453	ENSCAPP00000006025	Cullin 1.	Ring-box 1.	0.999
CUL3	CUL1	ENSCAPP00000016657	ENSCAPP00000006453	Cullin 3.	Cullin 1.	0.979
CUL3	CUL5	ENSCAPP00000016657	ENSCAPP00000012653	Cullin 3.	Cullin 5.	0.722
CUL3	DCUN1D2	ENSCAPP00000016657	ENSCAPP00000000415	Cullin 3.	Defective in cullin neddylation 1 domain containing 2.	0.953
CUL3	ENSCAPP00000001066	ENSCAPP00000016657	ENSCAPP00000001066	Cullin 3.	annotation not available	0.941
CUL3	ENSCAPP00000005342	ENSCAPP00000016657	ENSCAPP00000005342	Cullin 3.	annotation not available	0.927
CUL3	ENSCAPP00000006499	ENSCAPP00000016657	ENSCAPP00000006499	Cullin 3.	annotation not available	0.954
CUL3	ENSCAPP00000009519	ENSCAPP00000016657	ENSCAPP00000009519	Cullin 3.	annotation not available	0.997
CUL3	ENSCAPP00000009955	ENSCAPP00000016657	ENSCAPP00000009955	Cullin 3.	annotation not available	0.954
CUL3	NAE1	ENSCAPP00000016657	ENSCAPP00000008998	Cullin 3.	NEDD8 activating enzyme E1 subunit 1.	0.832
CUL3	RBX1	ENSCAPP00000016657	ENSCAPP00000006025	Cullin 3.	Ring-box 1.	0.999