Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000001093annotation not available (1845 aa)    
Predicted Functional Partners:
LRPAP1
LDL receptor related protein associated protein 1.
    
 0.989
LDLRAP1
Low density lipoprotein receptor adaptor protein 1.
    
 0.980
CUBN
Cubilin.
   
 0.961
CLU
Clusterin.
    
 0.936
LRP1
LDL receptor related protein 1.
    
  0.928
LRP1B
LDL receptor related protein 1B.
    
  0.915
GIPC1
GIPC PDZ domain containing family member 1.
    
 
 0.908
ENSCAPP00000006425
annotation not available
    
 
 0.908
PTCH1
Patched 1.
    
 0.886
PTCH2
Patched 2.
    
 0.876
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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