Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMMECR1LAMMECR1 like. (310 aa)    
Predicted Functional Partners:
ENSCAPP00000010296
annotation not available
    
   0.959
FNTA
Farnesyltransferase, CAAX box, alpha.
    
   0.905
HMGB3
High mobility group box 3.
      
 0.753
FGL1
Fibrinogen like 1.
    
 
 0.727
TRAPPC1
Trafficking protein particle complex 1.
   
 
  0.718
TRAPPC6A
Trafficking protein particle complex 6A.
     
  0.705
TRAPPC13
Trafficking protein particle complex 13.
     
  0.705
TRAPPC12
Trafficking protein particle complex 12.
     
  0.705
TRAPPC5
Trafficking protein particle complex 5.
     
  0.705
ENSCAPP00000011394
annotation not available
     
  0.705
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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