Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCAMP3Secretory carrier membrane protein 3. (307 aa)    
Predicted Functional Partners:
SCAMP2
Secretory carrier membrane protein 2.
   
   0.959
SCAMP1
Secretory carrier membrane protein 1.
   
   0.892
SCAMP5
Secretory carrier membrane protein 5.
    
   0.815
ITCH
Itchy E3 ubiquitin protein ligase.
    
 
 0.785
SCAMP4
Secretory carrier membrane protein 4.
    
   0.622
SUGP1
SURP and G-patch domain containing 1.
    
   0.539
YIPF2
Yip1 domain family member 2.
      
 0.529
KLHDC9
Kelch domain containing 9.
      
 0.529
FAM189B
Family with sequence similarity 189 member B.
   
  
 0.522
TMEM258
Transmembrane protein 258.
      
 0.520
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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